- Accounting department
- Committee on new medical equipment
- Davlat farmakopeyasini ishlab chiqish boʻlimi
- Department for certification of medical products
- Department of finance and economy
- Department of Licensing of Pharmaceutical Activities
- Department of pharmacological control
- Department of Public Procurement and Contracts
- Department of working with human resources
- Komplayens va moliyaviy nazorat shoʻbasi
- Laboratory for quality control and standardization of medicines
- Laboratory for quality control of medical devices and medical equipment
- Laboratory of vaccines, serous drugs and microbiological research
- Metrological Service of the Ministry of Health
- Narcotics Control Committee
- Pharmaco-toxicological research laboratory
- Pharmacological committee
- Pharmacopeia Committee
- Printing department
- Quality Management Department
- Registration department
- Sinov markazi
- The Information Technology Department
- Yuridik bo‘lim
- Отдел административно-хозяйственных дел
- Отдел внедрения специальной цифровой маркировки
- Отдел международных отношений
- Отдел формирование референтных цен
- Управление постмаркетингового надзора